1 - Change manually in database
2 - Write the migration with those changings
3 - Run flyway:repair -Dflyway.url=db_url -Dflyway.user=db_user -Dflyway.password=db_pass
flyway:repair -Dflyway.url=db_url -Dflyway.user=db_user -Dflyway.password=db_pass
4 - Test if flyway will build up the schema you suppose on an empty database