This is a typical problem that arises when using the plot_grid from libraries such as matplotlib or seaborn when there exists a misalignment of graphs due to inconsistencies in axis scales, tick labels, or figure sizes. Here are steps to debug and solve the problem:

1. Check Axis Limits and Scales Ensure all subplots have the same axis limits using plt.xlim() and plt.ylim() or by setting sharex=True and sharey=True in grid functions. Use a uniform scale (for example, linear or logarithmic for all subplots.
2. Balance Tick Labels Tick labels that are too long or inconsistent can overlap plots. Use uniform labels with plt. xticks() or plt.yticks(). Rotate labels with plt.xticks(rotation=45) or using the labelpad to adjust it.
3. Equal Aspect Ratio Use ax.set_aspect() to set the same aspect ratio for all subplots. For example: ax.set_aspect('equal').
4. Use tight_layout or constrained_layout Add plt. tight_layout() or specify in plt.figure() with constrained_layout=True to let automatically adjust the spacing.