You've not specified if there is just autofilter or excel tables which are filtered. So let's try to cover both cases
Sub Update()
' Open the source workbook
Set sourceWorkbook = Workbooks.Open(Filename:="D:\Desktop\Stop Work.xlsm")
with sourceWorkbook.Worksheets("Sheet1")
.AutoFilterMode = False
Dim lo As Long
For lo = 1 To .ListObjects.Count
.ListObjects(lo).ShowAutoFilter = False
Next lo
.Cells.Copy
end with
' Open the destination workbook
'....
BTW. The same question was crossposted at https://www.mrexcel.com/board/threads/add-a-rule-to-the-vba-to-remove-filters.1268355/