I faced a similar problem while building an msi file using the command "wix build outputMsiPath.msi wxsFilePath.wxs".

wix.exe : error WIX0001: WixToolset.Core.Native.WixNativeException: wixnative.exe failed with error code: -2147467259 - The handle is invalid. Output:

---> System.ComponentModel.Win32Exception (6): The handle is invalid. --- End of inner exception stack trace --- at WixToolset.Core.Native.WixNativeExe.Run() in D:\a\wix\wix\src\wix\WixToolset.Core.Native\WixNativeExe.cs:line 81 at WixToolset.Core.Native.Cabinet.Compress(IEnumerable`1 files, CompressionLevel compressionLevel, Int32 maxSize, Int32 maxThresh) in D:\a\wix\wix\src\wix\WixToolset.Core.Native\Cabinet.cs:line 60 at WixToolset.Core.WindowsInstaller.Bind.CabinetBuilder.CreateCabinet(CabinetWorkItem cabinetWorkItem) in D:\a\wix\wix\src\wix\WixToolset.Core.WindowsInstaller\Bind\CabinetBuilder.cs:line 192 at WixToolset.Core.WindowsInstaller.Bind.CabinetBuilder.ProcessWorkItems() in D:\a\wix\wix\src\wix\WixToolset.Core.WindowsInstaller\Bind\CabinetBuilder.cs:line 123

Do you have know why this occurs?