79548434

Date: 2025-04-01 11:05:10
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I've had similar issues with converting to PDBs from AF3 cif files. Regardless, you can try using PyMol or ChimeraX. The former has python libraries, so you can batch convert if you have a lot of files. I'm unsure if this will be any better than OpenBabel though - I suspect there is information missing from the cif to make some of the other file types.

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Posted by: dthorbur